rs12563057 chr1:26287213 G>A
- Sequence
gggaggatgtagggacagctgctg[G/A]ccagaacagatatgggacagacct
- ASB in cell types
- Kasumi-1 (acute myeloblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) monocytes from periferal blood
- ASB for transcription factors
- MTG8_HUMAN SRBP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTG8_HUMAN | 2.01 | -0.10 | 1.50 | n/a | n/a | |||
| SRBP2_HUMAN | 2.75 | n/a | 3.00 | -1.87 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood