rs12610536 chr19:4471118 G>A

Sequence
ctgcaaccccccgctcctgggttc[G/A]agtgattctcctgcctcagcttcc
ASB in cell types
K562 (myelogenous leukemia) monocytes from periferal blood HEK293 (embryonic kidney) primary B-CLL cells
ASB for transcription factors
SRBP2_HUMAN HDAC1_HUMAN HDAC2_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRBP2_HUMAN 1.99 -4.52 9.6·10-41.00 2.00 3.43 Discordant
HDAC1_HUMAN 2.40 0.00 4.2·10-31.00 2.00 n/a n/a
HDAC2_HUMAN 2.37 -4.57 5.4·10-31.00 2.00 n/a n/a
ANDR_HUMAN 2.14 -0.47 0.021.00 2.00 n/a No Hit
BRD4_HUMAN 1.60 0.25 0.040.92 2.00 n/a n/a
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Motif analysis

SRBP2_HUMAN Discordant
SRBP2_HUMAN pic

Genetic associations

GTEx eQTL Artery_Tibial,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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