rs12610538 chr19:57280235 G>A
- Sequence
ccctccgacttgtgcctatactaa[G/A]gcggtggccctaagacgacgcggg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) EA.hy 926 (human umbilical vein endothelial cell line) A549 (lung carcinoma)
- ASB for transcription factors
- MTA2_HUMAN ZN143_HUMAN HIF1A_HUMAN GCR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTA2_HUMAN | 3.60 | n/a | 1.50 | n/a | n/a | |||
| ZN143_HUMAN | -0.02 | 2.13 | 2.88 | n/a | No Hit | |||
| HIF1A_HUMAN | 1.84 | -0.58 | 1.50 | n/a | No Hit | |||
| GCR_HUMAN | 0.77 | -0.06 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Heart_Atrial_Appendage, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood