rs12611719 chr2:1817796 T>C
- Sequence
cccacggctggtcccgggtgtaaa[T/C]tataaagagggtgcttactatttt
- ASB in cell types
- A549 (lung carcinoma) GM10847 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.73 | 1.76 | 1.04 | n/a | n/a | |||
| RAD21_HUMAN | 0.16 | 0.98 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia