rs12613067 chr2:112805785 T>C
- Sequence
cttgccctgtcagaccacctgaca[T/C]gtctggacgagtctatcctagcat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SJSA-1(osteosarcoma) keratinocytes hTERT-HME1(Telomerase immortalized cell line)
- ASB for transcription factors
- P63_HUMAN RUNX3_HUMAN BRCA2_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P63_HUMAN | 1.69 | 0.37 | 1.00 | -4.01 | Concordant | |||
| RUNX3_HUMAN | 2.33 | -1.93 | 1.00 | n/a | No Hit | |||
| BRCA2_HUMAN | -0.06 | 1.92 | 1.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.73 | 0.40 | 1.00 | n/a | n/a |
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Motif analysis
