rs12614346 chr2:107026026 G>A

Sequence
ggcagaaactacctgagtttagtc[G/A]acttcagaggcgaggccacccacc
ASB in cell types
A549 (lung carcinoma)
ASB for transcription factors
EP300_HUMAN JUNB_HUMAN GCR_HUMAN CEBPB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN 0.25 1.97 1.008.9·10-7 2.06 n/a n/a
JUNB_HUMAN -0.77 1.74 1.007.4·10-5 1.94 n/a No Hit
GCR_HUMAN -0.47 1.63 1.002.6·10-4 2.35 n/a No Hit
CEBPB_HUMAN -1.17 2.26 1.001.2·10-3 2.00 n/a No Hit
JUN_HUMAN 0.02 1.26 1.006.1·10-3 2.12 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Esophagus_Mucosa,  Esophagus_Muscularis,  Testis,  Thyroid

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