rs12616573 chr2:175594192 A>G
- Sequence
cagactgctgtgctagcaatcagg[A/G]agactctgtgggtgtgggaccctc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIC_HUMAN HDAC1_HUMAN ARI1B_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | 3.02 | -3.16 | 1.00 | n/a | No Hit | |||
| HDAC1_HUMAN | 2.07 | -1.05 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.46 | -2.18 | 1.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.80 | -1.19 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Hypothalamus, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood