rs12617802 chr2:171521499 G>C
- Sequence
aatgcatacaagtgcacaatccct[G/C]tacactggccagaaccggtccatg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- REST_HUMAN SOX6_HUMAN LEF1_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | 1.17 | n/a | 1.50 | -1.88 | Weak Concordant | |||
| SOX6_HUMAN | 2.84 | -2.58 | 1.00 | n/a | No Hit | |||
| LEF1_HUMAN | 3.04 | 0.31 | 1.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.31 | 0.67 | 1.00 | n/a | n/a | |||
| TIF1A_HUMAN | 2.23 | -0.75 | 1.25 | n/a | n/a |
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Motif analysis
