rs12618593 chr2:127128795 T>C

Sequence
gtgaggtcctgttggccacatctg[T/C]gtggaatttcagtttctgtttaag
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.90 -0.07 0.011.00 1.08 n/a No Hit
ANDR_HUMAN 2.04 -4.21 0.011.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Pancreas,  Stomach,  Thyroid,  Whole_Blood

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