rs12618708 chr2:187544911 T>C
- Sequence
ggcggatcacctcaggtcaggagt[T/C]taagaccagcctggccaacatggc
- ASB in cell types
- HEK293 (embryonic kidney) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- NR1H3_HUMAN ZN335_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR1H3_HUMAN | 2.52 | -1.87 | 2.00 | n/a | No Hit | |||
| ZN335_HUMAN | 2.33 | -1.93 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis