rs12624105 chr2:12167822 G>C
- Sequence
actgtgactggccaggagtgagtg[G/C]tcattgtgcatacggtatacagac
- ASB in cell types
- bipolar neuron
- ASB for transcription factors
- STAG1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.17 | 0.45 | 1.07 | n/a | n/a | |||
| CTCF_HUMAN | 0.83 | 0.38 | 1.28 | 0.93 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration (geographic atrophy), ldl cholesterol, total cholesterol