rs12624349 chr20:51750474 C>T
- Sequence
cctggctggcaaccccacacagca[C/T]gagcccaaaaaattccagaaaaca
- ASB in cell types
- HUVEC-C (HUVEC, umbilical vein endothelial cells) breast tumor MDA-MB-231 (breast adenocarcinoma)
- ASB for transcription factors
- CDN1B_HUMAN PPARG_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | 0.15 | 1.52 | 3.00 | n/a | n/a | |||
| PPARG_HUMAN | 1.42 | -0.26 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), fasting blood glucose, obesity with early age of onset (age >2), years of education
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood