rs12624433 chr20:46052214 G>A

Sequence
tcctagctgtgtgactgtgcacac[G/A]tgactcactccctctgagatcaga
ASB for transcription factors
FOS_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOS_HUMAN -4.30 2.59 1.002.4·10-3 1.50 -0.23 Weak Discordant
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Motif analysis

FOS_HUMAN Weak Discordant
FOS_HUMAN pic

Genetic associations

EMBL-EBI depression,  depressive symptoms,  neuroticism,  self-reported math ability (mtag)
GRASP advanced age-related macular degeneration (geographic atrophy),  bipolar disorder,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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