rs12624434 chr20:63850870 G>A
- Sequence
ggtaaatgaggtggcagcgaccgc[G/A]gccgtcagcagtgatgcagccgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- E2F8_HUMAN HTF4_HUMAN KLF5_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F8_HUMAN | -3.01 | 3.06 | 1.00 | n/a | No Hit | |||
| HTF4_HUMAN | -1.59 | 1.86 | 1.00 | n/a | No Hit | |||
| KLF5_HUMAN | -2.41 | 2.65 | 1.00 | n/a | No Hit | |||
| CREB1_HUMAN | n/a | 2.51 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid