rs12624512 chr20:63850920 C>G
- Sequence
gtggatggtcgtaatggggaagac[C/G]tcacatagcctggagacgcctgct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CREB1_HUMAN E2F8_HUMAN HTF4_HUMAN BMI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -4.29 | 2.46 | 1.50 | 4.47 | Concordant | |||
| E2F8_HUMAN | -2.11 | 2.53 | 1.00 | n/a | No Hit | |||
| HTF4_HUMAN | -1.47 | 1.47 | 1.00 | n/a | No Hit | |||
| BMI1_HUMAN | -1.93 | 2.32 | 1.00 | n/a | n/a | |||
| COT1_HUMAN | -1.44 | 1.75 | 1.00 | 3.89 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid