rs12625016 chr20:57692380 G>C
- Sequence
accaggtgtgggaagagtcatggg[G/C]gcaggtgagcaatggtctgtcagg
- ASB in cell types
- 22RV1 (prostate carcinoma) TMD8 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- ANDR_HUMAN ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.75 | -0.90 | 2.00 | n/a | No Hit | |||
| ITF2_HUMAN | -0.96 | 2.30 | 1.50 | 2.15 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid