rs12627754 chr22:20317834 A>G

Sequence
ccatgcgcttgggattagtaaact[A/G]catacatcttacagctcaataaaa
ASB in cell types
THP-1 (acute monocytic leukemia)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.03 0.30 2.2·10-30.94 1.19 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  total cholesterol,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Nerve_Tibial,  Pancreas,  Thyroid,  Whole_Blood

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