rs12630884 chr3:175957146 G>A
- Sequence
gccatgttggaataatccttaaac[G/A]cccacaagagggccatactctcct
- ASB in cell types
- foreskin keratinocyte GM02630 (Fanconi anemi) GM19238 (female B-cells lymphoblastoid cell lines) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.40 | -0.44 | 1.23 | -1.25 | Weak Concordant | |||
| RAD21_HUMAN | 1.54 | -1.03 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | 2.05 | -1.51 | 1.00 | n/a | n/a |
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Motif analysis
