rs12638836 chr3:155930786 A>G

Sequence
attctttatccactcaaaaaacac[A/G]ggcagatcttgtctgccaaattat
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.44 0.99 4.7·10-31.00 2.33 -2.15 Concordant
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Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  serum creatinine,  total cholesterol,  years of education
GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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