rs12640135 chr4:56641575 T>C
- Sequence
gccttctgcattactaatctggaa[T/C]gctagggctgattcatatgaacca
- ASB in cell types
- MCF10A (breast epithelial cells) CFPAC-1(pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- TEAD4_HUMAN FOXA2_HUMAN TF65_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD4_HUMAN | 2.96 | -3.10 | 1.00 | -3.67 | Concordant | |||
| FOXA2_HUMAN | 1.11 | -0.11 | 1.58 | n/a | No Hit | |||
| TF65_HUMAN | 2.21 | -1.25 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, diastolic blood pressure (dbp), obesity with early age of onset (age >2), paternal transmission distortion, schizophrenia, triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Prostate, Thyroid, Uterus, Whole_Blood