rs12644283 chr4:119212394 T>G

Sequence
caagctgccgcttttgcagaaatg[T/G]tctatctcttggtctcgcgcgatc
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
K562 (myelogenous leukemia) 0.29 1.11 1.001.6·10-24 2.01
HepG2 (hepatoblastoma) 1.76 n/a 6.3·10-31.00 4.00
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Motif analysis

No data available

Genetic associations

GRASP amyotrophic lateral sclerosis (als) age of onset,  birth weight
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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