rs12646144 chr4:89434576 A>C
- Sequence
ttaggaatggcagacctctagtgg[A/C]caaaaagaaaagtcagcaatctaa
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.46 | 1.09 | 1.24 | 1.36 | Weak Concordant | |||
| STAG1_HUMAN | 0.01 | 1.30 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.56 | 1.27 | 1.08 | n/a | n/a | |||
| SMC3_HUMAN | 0.63 | 1.15 | 1.04 | n/a | n/a |
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Motif analysis
