rs12652980 chr5:173822689 T>G
- Sequence
gcagagttggggagggactagacg[T/G]tctcacgaaaaacaaagccacaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) breast tumor GM01310 ( Transformed lymphovlasoid cell line )
- ASB for transcription factors
- ESR1_HUMAN IKZF2_HUMAN ARNT_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.21 | 2.18 | 2.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.51 | -1.25 | 1.00 | n/a | n/a | |||
| ARNT_HUMAN | 2.20 | 0.15 | 1.75 | n/a | No Hit | |||
| TBX21_HUMAN | 1.83 | -1.59 | 1.00 | n/a | No Hit | |||
| MEF2B_HUMAN | 2.23 | -1.93 | 1.00 | n/a | No Hit |
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