rs12654228 chr5:62292073 C>A
- Sequence
ccgcagctcaaggaggcctgcctg[C/A]ctctgcagactccacctctggggg
- ASB in cell types
- SYO-1(Biphasic synovial sarcoma) GM12878 (female B-cells lymphoblastoid cell line) T cells from peripheral blood GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.63 | 0.31 | 1.48 | n/a | No Hit |
Items per page:
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Heart_Atrial_Appendage, Muscle_Skeletal