rs12654449 chr5:154205554 T>A
- Sequence
taaatgggctcatgggttgaatca[T/A]gtctctcaaaaagatacggcaaag
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.67 | -2.54 | 1.33 | -2.77 | Concordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), fasting blood glucose, homa-ir, hypertension, gender differentiated, simpson-angus scale
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Nerve_Tibial, Ovary, Skin_Sun_Exposed_Lower_leg