rs12658906 chr5:123397701 G>C

Sequence
atttcctgataaaaatctttacct[G/C]atgtaccttgcaagtcaaataaaa
ASB in cell types
22RV1 (prostate carcinoma) VCaP (prostate carcinoma) CWR22 (prostate carcinoma) breast tumor
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN PRGR_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.62 0.41 4.1·10-261.00 1.99 -0.40 Weak Concordant
FOXA1_HUMAN 1.50 -0.47 9.2·10-81.00 2.07 -0.42 Weak Concordant
PRGR_HUMAN 2.65 -0.64 1.5·10-61.00 2.00 n/a No Hit
GCR_HUMAN 2.48 n/a 1.2·10-41.00 3.00 1.30 Weak Discordant
HXB13_HUMAN 1.42 0.12 2.6·10-31.00 1.60 n/a No Hit
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Motif analysis

GCR_HUMAN Weak Discordant
GCR_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  birth weight,  body mass index (bmi),  diastolic blood pressure (dbp),  height,  microalbuminuria,  systolic blood pressure (sbp),  total cholesterol,  triglycerides,  urinary albumin-to-creatinine ratio,  years of education
GTEx eQTL Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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