rs12659181 chr5:149837919 G>A
- Sequence
cgaatccgctgcaggatttgttgc[G/A]cctccactggccggcccacacccg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM19239 (male B-cells lymphoblastoid cell line) HUES64 (embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.53 | -0.01 | 1.97 | 0.22 | Weak Discordant | |||
| STAG1_HUMAN | 1.18 | 0.09 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, aortic valve calcium, birth weight, refractive error, urinary albumin-to-creatinine ratio