rs12661145 chr6:20791306 A>T
- Sequence
agtatctgttcaatatatagtatt[A/T]ttaactttattactatgatagcta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- MTA2_HUMAN MEF2B_HUMAN COT1_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MTA2_HUMAN | 3.02 | n/a | 1.50 | n/a | n/a | |||
| MEF2B_HUMAN | 2.75 | -2.55 | 1.00 | -1.21 | Weak Concordant | |||
| COT1_HUMAN | 2.38 | -2.07 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 2.59 | -2.46 | 1.00 | n/a | No Hit | |||
| HTF4_HUMAN | 2.27 | -2.27 | 1.00 | n/a | No Hit |
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Motif analysis
