rs12662920 chr6:166309383 G>A

Sequence
ggacagcatggccctcccccagcc[G/A]cctcagtctccgaggcagcagcaa
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.97 1.75 1.005.5·10-4 1.25 n/a No Hit
ANDR_HUMAN 1.73 -0.40 0.021.00 1.60 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Spleen,  Thyroid,  Whole_Blood

Download