rs12666836 chr7:116138422 C>T

Sequence
tacgtcacacagaagctctgatct[C/T]atataggcccttgttagggagaat
ASB in cell types
glioblastoma cells THP-1 (acute monocytic leukemia) K562 (myelogenous leukemia)
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.03 0.51 4.0·10-81.00 1.34 n/a No Hit
RAD21_HUMAN 1.32 0.63 8.0·10-30.79 1.18 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  hdl cholesterol,  ldl cholesterol change with statins,  total cholesterol,  total cholesterol change with statins,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Pituitary,  Testis,  Whole_Blood

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