rs12669977 chr7:13092775 G>T
- Sequence
ggtattatttccttaaagagtaaa[G/T]ggggcagaagacacattgagcatt
- ASB in cell types
- VCaP (prostate carcinoma) primary endothelial colony-forming cells K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXA1_HUMAN ERG_HUMAN TAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.55 | 2.51 | 2.00 | n/a | No Hit | |||
| ERG_HUMAN | 2.65 | -2.34 | 1.00 | n/a | No Hit | |||
| TAL1_HUMAN | 1.67 | 0.55 | 1.67 | -1.82 | Weak Concordant |
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Motif analysis
