rs12671575 chr7:43682476 C>T

Sequence
tgaacatggtcaactaaaatgtca[C/T]ggtgacaggtactattacagaaag
ASB in cell types
T47D (invasive ductal carcinoma)
ASB for transcription factors
ESR1_HUMAN PRGR_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.96 0.08 1.9·10-171.00 1.70 -0.89 Weak Concordant
PRGR_HUMAN 1.86 -0.08 5.7·10-61.00 1.17 n/a No Hit
FOXA1_HUMAN 1.11 0.42 0.031.00 1.64 n/a No Hit
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Motif analysis

ESR1_HUMAN Weak Concordant
ESR1_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  refractive error,  rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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