rs12672451 chr7:107213372 C>G

Sequence
agcagcgccaaacagtggctccac[C/G]tagtgtcagagcccatcccatggt
ASB for transcription factors
CTCF_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.50 -1.56 7.7·10-61.00 1.33 -5.28 Concordant
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

EMBL-EBI macular thickness
GRASP ldl cholesterol,  triglycerides,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid,  Whole_Blood

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