rs12677454 chr8:30383033 G>A
- Sequence
tctgcaactcccacagccaccccc[G/A]ccctatccccagcagcacttaaac
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- KDM1A_HUMAN EGR1_HUMAN ARI1B_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.23 | -0.54 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | 2.82 | n/a | 2.00 | -2.98 | Concordant | |||
| ARI1B_HUMAN | 2.35 | n/a | 2.00 | n/a | n/a | |||
| HDAC2_HUMAN | 1.72 | n/a | 2.00 | n/a | n/a | |||
| MTG8R_HUMAN | 2.65 | -4.88 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Vagina