rs12679383 chr8:22137288 T>G
- Sequence
atggtgagaccagcaccggggcag[T/G]agagggcagagctgggtaccccgg
- ASB in cell types
- NB69 (neuroblastoma) GM02255 (Lymphoblastoid Cell Lines) GM02610 (Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.50 | 0.18 | 1.37 | -2.60 | Concordant | |||
| RAD21_HUMAN | 1.21 | -0.72 | 1.22 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood