rs12681417 chr8:104622775 G>A

Sequence
aaccccatttgaaggaagcgagtc[G/A]ttatctcagggtcccattgcagtt
ASB in cell types
CTV-1 (Adult T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium)
ASB for transcription factors
SPI1_HUMAN SMCA4_HUMAN GCR_HUMAN GATA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.32 -0.10 2.5·10-61.00 1.04 n/a No Hit
SMCA4_HUMAN 1.41 -0.12 1.9·10-31.00 1.12 n/a n/a
GCR_HUMAN -2.75 2.65 1.003.9·10-3 1.00 n/a No Hit
GATA2_HUMAN 1.50 -0.66 0.031.00 2.00 -1.38 Weak Concordant
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Motif analysis

GATA2_HUMAN Weak Concordant
GATA2_HUMAN pic

Genetic associations

GRASP infant head circumference,  triglycerides change with statins
GTEx eQTL Artery_Tibial,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Minor_Salivary_Gland,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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