rs12681832 chr8:20380912 A>G
- Sequence
tgtggggccggcatcctcatttcc[A/G]gggctggagcagcctgaagcttcc
- ASB in cell types
- GM17942 (lymphoblastoid cell) MS-1 (Small cell lung carcinoma) HeLa S3 (cervical adenocarcinoma) HCPEpiC (choroid plexus epithelial cells)
- ASB for transcription factors
- GABP1_HUMAN CTCF_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABP1_HUMAN | n/a | 2.89 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.27 | 0.70 | 1.34 | n/a | No Hit | |||
| GABPA_HUMAN | -0.58 | 2.31 | 1.75 | 5.03 | Concordant |
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Motif analysis
