rs12682500 chr8:120868895 G>A
- Sequence
gaagaagaaaaaaaaaaaggaact[G/A]aggtacagaaatcggaagtgaggt
- ASB in cell types
- HepG2 (hepatoblastoma) GM12891 (male B- cells lymphoblastoid cell line) RWPE1 (prostate epithelial cells) THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- SPI1_HUMAN GABPA_HUMAN SMC1A_HUMAN CDK8_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.48 | -3.68 | 2.07 | -0.08 | Weak Concordant | |||
| GABPA_HUMAN | 2.65 | -0.50 | 1.67 | n/a | No Hit | |||
| SMC1A_HUMAN | 2.45 | n/a | 1.00 | n/a | n/a | |||
| CDK8_HUMAN | 1.74 | -0.36 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | 1.56 | -0.57 | 1.38 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, college completion, fasting blood glucose, hdl cholesterol, homa-b, major depressive disorder (narrow definition), major depressive disorder (narrow definition) (males), total cholesterol, years of education