rs12683459 chr9:121286020 G>A
- Sequence
ccatttccggaactgtgtgtgcct[G/A]tgatgcctgcggagttggcttggc
- ASB in cell types
- BEAS-2B (bronchial epithelium) MDM(monocyte derived macrophages) CD14+ monocytes MV-4-11 (Childhood acute monocytic leukemia)
- ASB for transcription factors
- GCR_HUMAN TF65_HUMAN STAT1_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.39 | 0.03 | 1.25 | n/a | No Hit | |||
| TF65_HUMAN | 2.35 | -4.74 | 2.75 | n/a | No Hit | |||
| STAT1_HUMAN | 2.24 | 0.33 | 2.00 | n/a | No Hit | |||
| CDK9_HUMAN | 2.09 | 0.36 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.27 | 0.12 | 1.98 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood