rs12692386 chr2:9555777 A>G
- Sequence
tctaccgccaggctcgacgccccc[A/G]gaagtgcaggtggcgttaccaaag
- ASB in cell types
- keratinocytes VCaP (prostate carcinoma) HCT-116 (colon carcinoma) liver
- ASB for transcription factors
- CTCF_HUMAN SNAI2_HUMAN ELF1_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.45 | 1.58 | 1.42 | n/a | No Hit | |||
| SNAI2_HUMAN | n/a | 4.23 | 1.50 | n/a | No Hit | |||
| ELF1_HUMAN | 0.26 | 2.08 | 1.50 | 6.91 | Concordant | |||
| BRD4_HUMAN | -0.17 | 1.19 | 1.38 | n/a | n/a | |||
| ERG_HUMAN | -0.71 | 1.76 | 1.79 | 6.06 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Liver, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus