rs12693579 chr2:190534707 T>C
- Sequence
cgagccctaggggaccggctccgc[T/C]gcgaggagcggaagtggcgcgggg
- ASB in cell types
- macrophages form periferal blood uterus SEM (childhood B acute lymphoblastic leukemia) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN TIF1B_HUMAN OLIG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.48 | 1.75 | 1.10 | n/a | No Hit | |||
| SPI1_HUMAN | 0.06 | 1.60 | 1.79 | n/a | No Hit | |||
| TIF1B_HUMAN | n/a | 2.82 | 2.00 | n/a | n/a | |||
| OLIG2_HUMAN | 2.36 | 0.10 | 1.00 | n/a | No Hit | |||
| STAT1_HUMAN | 0.26 | 2.49 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood