rs12694830 chr2:230098005 T>C
- Sequence
tgtacaggtttgcgtgtggacata[T/C]attttcatttctcttgtgtcaata
- ASB in cell types
- MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) MCF7 (Invasive ductal breast carcinoma) PC3(bone mets prostate adenocarcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN PBX4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.91 | -0.04 | 2.13 | 0.03 | Weak Discordant | |||
| ANDR_HUMAN | 1.92 | -0.87 | 1.78 | n/a | No Hit | |||
| PBX4_HUMAN | 2.81 | -5.04 | 2.00 | n/a | n/a |
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Motif analysis
