rs12696461 chr3:178746066 G>A
- Sequence
cacagctccactaggtggtgcccc[G/A]gtagggactctgtgtggtggctcc
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) GM02255 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.35 | 2.37 | 1.15 | 0.33 | Weak Concordant |
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Motif analysis
