rs12696600 chr3:190322418 C>A

Sequence
ctggagtctggatactagaagctg[C/A]ggttgctcccaggctcgggaactg
ASB in cell types
glioblastoma patient-derived cell model D54 (H54, Human glioblastoma)
ASB for transcription factors
SMAD3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMAD3_HUMAN 2.07 -2.26 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP fasting insulin,  hdl cholesterol,  homa-b
GTEx eQTL Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Esophagus_Mucosa,  Liver,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Vagina

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