rs12696600 chr3:190322418 C>A

Sequence
ctggagtctggatactagaagctg[C/A]ggttgctcccaggctcgggaactg
ASB in cell types
glioblastoma patient-derived cell model D54 (H54, Human glioblastoma)
ASB for transcription factors
SMAD3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMAD3_HUMAN 2.07 -2.26 0.031.00 1.00 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP fasting insulin hdl cholesterol homa-b
GTEx eQTL Adipose_Visceral_Omentum Adrenal_Gland Artery_Tibial Esophagus_Mucosa Liver Lung Minor_Salivary_Gland Nerve_Tibial Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid Vagina

Download