rs12701758 chr7:39733396 G>A
- Sequence
acgtcacgagacccccgctatctc[G/A]ttggtggctatttcctctcccgct
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ATF2_HUMAN RBM25_HUMAN CREB1_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -0.44 | 3.84 | 1.50 | n/a | No Hit | |||
| RBM25_HUMAN | -3.67 | 3.35 | 1.00 | n/a | n/a | |||
| CREB1_HUMAN | -0.11 | 1.63 | 2.28 | n/a | No Hit | |||
| GABP1_HUMAN | 1.35 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, homa-ir, ldl cholesterol, microalbuminuria, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood