rs12708935 chr16:72925128 G>A
- Sequence
tgtacaatctgtgctttgtgtgct[G/A]tgcaaataacctgtggggctggag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LHSAR (prostate epithelial cells) breast tumor MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GATA3_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.39 | 0.05 | 2.85 | 1.26 | Weak Discordant | |||
| ESR1_HUMAN | 1.56 | 0.24 | 2.56 | n/a | No Hit | |||
| GATA3_HUMAN | 1.71 | -4.28 | 2.17 | n/a | No Hit | |||
| ZFX_HUMAN | 2.42 | -1.25 | 2.00 | n/a | No Hit |
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Motif analysis
