rs12711751 chr2:113080188 T>G
- Sequence
acagactccacgctatctagaggc[T/G]tgatccccctgcccatttctgagg
- ASB in cell types
- RWPE1 (prostate epithelial cells) HCT-116 (colon carcinoma) Ishikawa (endometrial adenocarcinoma) H929 (plasma cell myeloma)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.27 | 1.40 | 1.34 | n/a | n/a | |||
| CTCF_HUMAN | 0.91 | 0.90 | 1.23 | 0.27 | Weak Concordant |
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Motif analysis
