rs12712633 chr2:39217094 C>G

Sequence
gtacacatcgacgcggcgcccagt[C/G]cagaaagatagagcgctgcagcac
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia) Th1-cells
ASB for transcription factors
FOXA1_HUMAN ESR1_HUMAN CDK9_HUMAN HES1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.31 1.80 1.001.1·10-9 1.54 n/a No Hit
ESR1_HUMAN -0.22 1.51 1.005.5·10-4 1.62 n/a No Hit
CDK9_HUMAN 0.07 2.13 1.001.3·10-3 1.00 n/a n/a
HES1_HUMAN -2.39 2.73 1.008.7·10-3 1.00 n/a No Hit
GATA3_HUMAN -0.80 1.94 1.000.03 2.40 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP barnes akathisia rating scale,  bipolar disorder, combined control dataset,  diastolic blood pressure (dbp),  major depressive disorder,  systolic blood pressure (sbp)
GTEx eQTL Muscle_Skeletal,  Testis

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