rs1272601 chr10:77894141 C>T
- Sequence
agcctgtgtgtgtgagaggctgca[C/T]gtgcacatacaaaaacagcaaggt
- ASB in cell types
- T47D (invasive ductal carcinoma)
- ASB for transcription factors
- HIF3A_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIF3A_HUMAN | 2.44 | -4.23 | 1.50 | -2.20 | Concordant | |||
| HIF1A_HUMAN | 2.33 | -4.06 | 1.50 | -2.79 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood