rs12740695 chr1:85934708 T>A
- Sequence
gctggctgcctgttttgtaaatag[T/A]ttcattggaacacagacttgccca
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN A2NVP9_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.34 | -0.22 | 1.55 | 3.73 | Discordant | |||
| A2NVP9_HUMAN | 2.71 | -3.30 | 1.50 | n/a | n/a | |||
| FOXA1_HUMAN | 0.97 | -0.17 | 2.00 | 0.40 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid